WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D2092.1a.1 Sequence Name  D2092.1a.1
Length (nt)  2466   Chromosome Location  I: 6629717-6633593
Chromosome . Primary Identifier  I Chromosome Location . Start  6629717
Chromosome Location . End  6633593 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D2092.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017063 mctp-1 D2092.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D2092.1a D2092.1a 2175   I: 6629906-6629950

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D2092.1a.1 6629717 6633593 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon16791   234   I: 6629717-6629950 Caenorhabditis elegans
Exon16794   312   I: 6630110-6630421 Caenorhabditis elegans
Exon16798   165   I: 6630529-6630693 Caenorhabditis elegans
Exon16802   126   I: 6630745-6630870 Caenorhabditis elegans
Exon16806   274   I: 6630913-6631186 Caenorhabditis elegans
Exon16810   142   I: 6631235-6631376 Caenorhabditis elegans
Exon16814   245   I: 6631672-6631916 Caenorhabditis elegans
Exon16818   250   I: 6632032-6632281 Caenorhabditis elegans
Exon16824   167   I: 6632625-6632791 Caenorhabditis elegans
Exon16827   223   I: 6632837-6633059 Caenorhabditis elegans
Exon16830   124   I: 6633182-6633305 Caenorhabditis elegans
Exon16833   204   I: 6633390-6633593 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D2092.1a.1 6629717 6633593 -1

1 Sequence

Length
2466

1 Sequence Ontology Term

Identifier Name Description
transcript