WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C37A2.5a.1 Sequence Name  C37A2.5a.1
Length (nt)  3155   Chromosome Location  I: 6773973-6780151
Chromosome . Primary Identifier  I Chromosome Location . Start  6773973
Chromosome Location . End  6780151 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C37A2.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004111 pqn-21 C37A2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C37A2.5a C37A2.5a 2367   I: 6774516-6774623

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C37A2.5a.1 6773973 6780151 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon17136   651   I: 6773973-6774623 Caenorhabditis elegans
Exon17140   116   I: 6774675-6774790 Caenorhabditis elegans
Exon17144   393   I: 6774837-6775229 Caenorhabditis elegans
Exon17148   295   I: 6775312-6775606 Caenorhabditis elegans
Exon17152   132   I: 6776405-6776536 Caenorhabditis elegans
Exon17156   100   I: 6776592-6776691 Caenorhabditis elegans
Exon17160   64   I: 6777197-6777260 Caenorhabditis elegans
Exon17164   68   I: 6777315-6777382 Caenorhabditis elegans
Exon17168   299   I: 6777504-6777802 Caenorhabditis elegans
Exon17171   239   I: 6778516-6778754 Caenorhabditis elegans
Exon17175   204   I: 6778808-6779011 Caenorhabditis elegans
Exon17177   210   I: 6779438-6779647 Caenorhabditis elegans
Exon17180   384   I: 6779768-6780151 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C37A2.5a.1 6773973 6780151 -1

1 Sequence

Length
3155

1 Sequence Ontology Term

Identifier Name Description
transcript