WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C37A2.5c.1 Sequence Name  C37A2.5c.1
Length (nt)  1950   Chromosome Location  I: 6774516-6778943
Chromosome . Primary Identifier  I Chromosome Location . Start  6774516
Chromosome Location . End  6778943 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C37A2.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004111 pqn-21 C37A2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C37A2.5c C37A2.5c 1950   I: 6774516-6774623

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C37A2.5c.1 6774516 6778943 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon17139   108   I: 6774516-6774623 Caenorhabditis elegans
Exon17142   116   I: 6774675-6774790 Caenorhabditis elegans
Exon17146   393   I: 6774837-6775229 Caenorhabditis elegans
Exon17150   295   I: 6775312-6775606 Caenorhabditis elegans
Exon17154   132   I: 6776405-6776536 Caenorhabditis elegans
Exon17158   100   I: 6776592-6776691 Caenorhabditis elegans
Exon17161   64   I: 6777197-6777260 Caenorhabditis elegans
Exon17165   68   I: 6777315-6777382 Caenorhabditis elegans
Exon17170   299   I: 6777504-6777802 Caenorhabditis elegans
Exon17173   239   I: 6778516-6778754 Caenorhabditis elegans
Exon17174   136   I: 6778808-6778943 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C37A2.5c.1 6774516 6778943 -1

1 Sequence

Length
1950

1 Sequence Ontology Term

Identifier Name Description
transcript