WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C37A2.2.1 Sequence Name  C37A2.2.1
Length (nt)  4645   Chromosome Location  I: 6790978-6798161
Chromosome . Primary Identifier  I Chromosome Location . Start  6790978
Chromosome Location . End  6798161 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C37A2.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004110 pqn-20 C37A2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C37A2.2 C37A2.2 3765   I: 6791025-6791121

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C37A2.2.1 6790978 6798161 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon17212   144   I: 6790978-6791121 Caenorhabditis elegans
Exon17213   84   I: 6791312-6791395 Caenorhabditis elegans
Exon17214   234   I: 6791441-6791674 Caenorhabditis elegans
Exon17215   105   I: 6793014-6793118 Caenorhabditis elegans
Exon17216   216   I: 6793162-6793377 Caenorhabditis elegans
Exon17217   833   I: 6793424-6794256 Caenorhabditis elegans
Exon17218   696   I: 6794333-6795028 Caenorhabditis elegans
Exon17219   451   I: 6795074-6795524 Caenorhabditis elegans
Exon17220   120   I: 6795582-6795701 Caenorhabditis elegans
Exon17221   132   I: 6795775-6795906 Caenorhabditis elegans
Exon17222   134   I: 6796008-6796141 Caenorhabditis elegans
Exon17223   207   I: 6796560-6796766 Caenorhabditis elegans
Exon17224   1289   I: 6796873-6798161 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C37A2.2.1 6790978 6798161 1

1 Sequence

Length
4645

1 Sequence Ontology Term

Identifier Name Description
transcript