WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48B6.8.1 Sequence Name  C48B6.8.1
Length (nt)  2303   Chromosome Location  I: 6917700-6922973
Chromosome . Primary Identifier  I Chromosome Location . Start  6917700
Chromosome Location . End  6922973 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48B6.8.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016744 bbs-9 C48B6.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48B6.8 C48B6.8 2235   I: 6917750-6917896

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C48B6.8.1 6917700 6922973 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon17567   197   I: 6917700-6917896 Caenorhabditis elegans
Exon17568   89   I: 6918242-6918330 Caenorhabditis elegans
Exon17569   67   I: 6918379-6918445 Caenorhabditis elegans
Exon17570   153   I: 6918495-6918647 Caenorhabditis elegans
Exon17571   152   I: 6918704-6918855 Caenorhabditis elegans
Exon17572   87   I: 6919038-6919124 Caenorhabditis elegans
Exon17573   132   I: 6919405-6919536 Caenorhabditis elegans
Exon17574   99   I: 6919589-6919687 Caenorhabditis elegans
Exon17575   148   I: 6919968-6920115 Caenorhabditis elegans
Exon17576   159   I: 6920157-6920315 Caenorhabditis elegans
Exon17577   88   I: 6920704-6920791 Caenorhabditis elegans
Exon17578   130   I: 6920841-6920970 Caenorhabditis elegans
Exon17579   187   I: 6921021-6921207 Caenorhabditis elegans
Exon17580   308   I: 6921381-6921688 Caenorhabditis elegans
Exon17581   133   I: 6922153-6922285 Caenorhabditis elegans
Exon17582   68   I: 6922332-6922399 Caenorhabditis elegans
Exon17583   106   I: 6922868-6922973 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C48B6.8.1 6917700 6922973 -1

1 Sequence

Length
2303

1 Sequence Ontology Term

Identifier Name Description
transcript