WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:H06O01.2.1 Sequence Name  H06O01.2.1
Length (nt)  4847   Chromosome Location  I: 7009060-7015223
Chromosome . Primary Identifier  I Chromosome Location . Start  7009060
Chromosome Location . End  7015223 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H06O01.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010369 chd-1 H06O01.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:H06O01.2 H06O01.2 4386   I: 7009506-7009526

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:H06O01.2.1 7009060 7015223 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon17781   467   I: 7009060-7009526 Caenorhabditis elegans
Exon17782   473   I: 7009576-7010048 Caenorhabditis elegans
Exon17783   166   I: 7010327-7010492 Caenorhabditis elegans
Exon17784   429   I: 7010539-7010967 Caenorhabditis elegans
Exon17785   160   I: 7011145-7011304 Caenorhabditis elegans
Exon17786   1655   I: 7011468-7013122 Caenorhabditis elegans
Exon17787   351   I: 7013169-7013519 Caenorhabditis elegans
Exon17789   621   I: 7013585-7014205 Caenorhabditis elegans
Exon17790   237   I: 7014503-7014739 Caenorhabditis elegans
Exon17791   143   I: 7014792-7014934 Caenorhabditis elegans
Exon17792   145   I: 7015079-7015223 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:H06O01.2.1 7009060 7015223 -1

1 Sequence

Length
4847

1 Sequence Ontology Term

Identifier Name Description
transcript