WormMine: Gene WBGene00219578

• WormBase Gene ID: WBGene00219578
• Gene Name: linc-141
• Sequence Name: F07A5.8
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in AVK; PVT; RIS; and neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by cep-1; etr-1; and ogt-1 based on RNA-seq studies.
• Biotype: SO:0001641
• Genetic Position: I :2.05±
• Length (nt): 234

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219578

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F07A5.8	F07A5.8	234	I: 7372296-7372529

Other

0 CDSs

0 RNAi Result

5 Allele

• gk962858
• gk962706
• gk963902
• gk367917
• tm7971

1 Chromosome

• WormBase ID: I
• Organism: Caenorhabditis elegans
• Length (nt): 15072434

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219578
• Start: 7372296
• End: 7372529
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrI_7371535..7372295
• Length (nt): 761
• Chromosome Location: I: 7371535-7372295
• Organism: Caenorhabditis elegans

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology.	DESEQ2, fold change > 2 and FDR < 0.01.	WBPaper00062103:neuron_enriched
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts significantly enriched in AVK neurons comparing to all cell types at L1 larva stage.	edgeR, FDR < 0.001, fold change > 2.	WBPaper00055565:AVK_enriched
	Transcripts that showed significantly increased expression in etr-1(lq61) comparing to in N2 animals at L1 larva stage.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:etr-1(lq61)_upregulated
	ncRNAs with significantly increased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq.	ncRNAs with more than 2 fold difference in expression are considered differentially expressed	WBPaper00045380:cep-1(gk138)_upregulated_normal
	Single-cell RNA-Seq cell group 138_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:138_0
	Single-cell RNA-Seq cell group 144_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:144_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219578
• Start: 7372296
• End: 7372529
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 234

1 Sequence Ontology Term