WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T25G3.2.2 Sequence Name  T25G3.2.2
Length (nt)  4177   Chromosome Location  I: 7554877-7559916
Chromosome . Primary Identifier  I Chromosome Location . Start  7554877
Chromosome Location . End  7559916 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T25G3.2.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000496 chs-1 T25G3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T25G3.2 T25G3.2 3969   I: 7555001-7555108

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T25G3.2.2 7554877 7559916 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon19437   232   I: 7554877-7555108 Caenorhabditis elegans
Exon19439   142   I: 7555157-7555298 Caenorhabditis elegans
Exon19441   602   I: 7555343-7555944 Caenorhabditis elegans
Exon19443   92   I: 7555989-7556080 Caenorhabditis elegans
Exon19445   348   I: 7556129-7556476 Caenorhabditis elegans
Exon19447   1472   I: 7556525-7557996 Caenorhabditis elegans
Exon19449   383   I: 7558043-7558425 Caenorhabditis elegans
Exon19451   403   I: 7558471-7558873 Caenorhabditis elegans
Exon19453   255   I: 7558927-7559181 Caenorhabditis elegans
Exon19454   243   I: 7559293-7559535 Caenorhabditis elegans
Exon19457   5   I: 7559912-7559916 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T25G3.2.2 7554877 7559916 1

1 Sequence

Length
4177

1 Sequence Ontology Term

Identifier Name Description
transcript