WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00077551 Gene Name  H15N14.3
Sequence Name  ? H15N14.3 Organism  Caenorhabditis elegans
Automated Description  Enriched in germ line based on single-cell RNA-seq studies. Is affected by eat-2 based on microarray studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 342
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00077551

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

4 Allele

Public Name
gk962858
gk962706
gk963902
gk963849

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00077551 7777670 7778011 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrI_7778012..7779418   1407 I: 7778012-7779418 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Reduced humidity (98% relative humidity). Genes that were down-regulated after one day exposure to reduced humidity (98% relative humidity) according to microarray analysis. Multiple hypothesis testing with the Benjamini-Hochberg correction was applied on calculated p-values. A change in the expression level was considered to be significant if the adjusted p-value was less than 0.001. WBPaper00044578:reduced-humidity_downregulated_microarray
  Transcripts that showed significantly decreased expression in eat-2(ad465) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:eat-2(ad465)_downregulated
  Single-cell RNA-Seq cell group 57_1 expressed in germline. scVI 0.6.0 WBPaper00065841:57_1

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00077551 7777670 7778011 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
342

1 Sequence Ontology Term