WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F55D12.2a.1 Sequence Name  F55D12.2a.1
Length (nt)  2534   Chromosome Location  I: 7889310-7894864
Chromosome . Primary Identifier  I Chromosome Location . Start  7889310
Chromosome Location . End  7894864 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F55D12.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010111 F55D12.2 F55D12.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F55D12.2a F55D12.2a 2139   I: 7889557-7889611

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F55D12.2a.1 7889310 7894864 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon20432   302   I: 7889310-7889611 Caenorhabditis elegans
Exon20435   194   I: 7891443-7891636 Caenorhabditis elegans
Exon20437   108   I: 7891685-7891792 Caenorhabditis elegans
Exon20439   114   I: 7891838-7891951 Caenorhabditis elegans
Exon20440   79   I: 7892035-7892113 Caenorhabditis elegans
Exon20442   278   I: 7892197-7892474 Caenorhabditis elegans
Exon20444   87   I: 7892524-7892610 Caenorhabditis elegans
Exon20446   105   I: 7892682-7892786 Caenorhabditis elegans
Exon20448   121   I: 7892839-7892959 Caenorhabditis elegans
Exon20450   139   I: 7893265-7893403 Caenorhabditis elegans
Exon20452   205   I: 7893449-7893653 Caenorhabditis elegans
Exon20454   189   I: 7893790-7893978 Caenorhabditis elegans
Exon20456   170   I: 7894025-7894194 Caenorhabditis elegans
Exon20458   142   I: 7894241-7894382 Caenorhabditis elegans
Exon20461   301   I: 7894564-7894864 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F55D12.2a.1 7889310 7894864 1

1 Sequence

Length
2534

1 Sequence Ontology Term

Identifier Name Description
transcript