WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T22C1.7.1 Sequence Name  T22C1.7.1
Length (nt)  3044   Chromosome Location  I: 7946193-7951593
Chromosome . Primary Identifier  I Chromosome Location . Start  7946193
Chromosome Location . End  7951593 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T22C1.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002179 jph-1 T22C1.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T22C1.7 T22C1.7 2244   I: 7946944-7947057

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T22C1.7.1 7946193 7951593 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon20570   865   I: 7946193-7947057 Caenorhabditis elegans
Exon20571   129   I: 7947433-7947561 Caenorhabditis elegans
Exon20572   174   I: 7948022-7948195 Caenorhabditis elegans
Exon20573   109   I: 7948388-7948496 Caenorhabditis elegans
Exon20574   329   I: 7948550-7948878 Caenorhabditis elegans
Exon20575   475   I: 7948977-7949451 Caenorhabditis elegans
Exon20576   361   I: 7949511-7949871 Caenorhabditis elegans
Exon20577   174   I: 7950318-7950491 Caenorhabditis elegans
Exon20578   131   I: 7950540-7950670 Caenorhabditis elegans
Exon20579   297   I: 7951297-7951593 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T22C1.7.1 7946193 7951593 -1

1 Sequence

Length
3044

1 Sequence Ontology Term

Identifier Name Description
transcript