WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T22C1.10a.1 Sequence Name  T22C1.10a.1
Length (nt)  4089   Chromosome Location  I: 7962052-7972443
Chromosome . Primary Identifier  I Chromosome Location . Start  7962052
Chromosome Location . End  7972443 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T22C1.10a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004318 rbg-2 T22C1.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T22C1.10a T22C1.10a 3924   I: 7962065-7962164

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T22C1.10a.1 7962052 7972443 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon20602   113   I: 7962052-7962164 Caenorhabditis elegans
Exon20604   258   I: 7962216-7962473 Caenorhabditis elegans
Exon20606   245   I: 7962521-7962765 Caenorhabditis elegans
Exon20608   600   I: 7962958-7963557 Caenorhabditis elegans
Exon20610   147   I: 7963677-7963823 Caenorhabditis elegans
Exon20612   653   I: 7964342-7964994 Caenorhabditis elegans
Exon20614   571   I: 7965448-7966018 Caenorhabditis elegans
Exon20616   211   I: 7966686-7966896 Caenorhabditis elegans
Exon20624   65   I: 7970527-7970591 Caenorhabditis elegans
Exon20626   288   I: 7970689-7970976 Caenorhabditis elegans
Exon20628   393   I: 7971453-7971845 Caenorhabditis elegans
Exon20631   545   I: 7971899-7972443 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T22C1.10a.1 7962052 7972443 1

1 Sequence

Length
4089

1 Sequence Ontology Term

Identifier Name Description
transcript