WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54G4.1d.1 Sequence Name  C54G4.1d.1
Length (nt)  2867   Chromosome Location  I: 8014406-8019581
Chromosome . Primary Identifier  I Chromosome Location . Start  8014406
Chromosome Location . End  8019581 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54G4.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008311 rskn-2 C54G4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54G4.1d C54G4.1d 2295   I: 8014468-8014632

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C54G4.1d.1 8014406 8019581 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon20744   227   I: 8014406-8014632 Caenorhabditis elegans
Exon20749   398   I: 8014903-8015300 Caenorhabditis elegans
Exon20752   147   I: 8015681-8015827 Caenorhabditis elegans
Exon20755   307   I: 8015872-8016178 Caenorhabditis elegans
Exon20758   173   I: 8016284-8016456 Caenorhabditis elegans
Exon20761   232   I: 8016581-8016812 Caenorhabditis elegans
Exon20764   90   I: 8016872-8016961 Caenorhabditis elegans
Exon20765   98   I: 8017134-8017231 Caenorhabditis elegans
Exon20770   109   I: 8017784-8017892 Caenorhabditis elegans
Exon20772   277   I: 8018139-8018415 Caenorhabditis elegans
Exon20778   148   I: 8018470-8018617 Caenorhabditis elegans
Exon20782   661   I: 8018921-8019581 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C54G4.1d.1 8014406 8019581 1

1 Sequence

Length
2867

1 Sequence Ontology Term

Identifier Name Description
transcript