WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54G4.1c.1 Sequence Name  C54G4.1c.1
Length (nt)  2889   Chromosome Location  I: 8014410-8019580
Chromosome . Primary Identifier  I Chromosome Location . Start  8014410
Chromosome Location . End  8019580 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54G4.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008311 rskn-2 C54G4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54G4.1c C54G4.1c 2322   I: 8014468-8014632

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C54G4.1c.1 8014410 8019580 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon20745   223   I: 8014410-8014632 Caenorhabditis elegans
Exon20748   398   I: 8014903-8015300 Caenorhabditis elegans
Exon20751   147   I: 8015681-8015827 Caenorhabditis elegans
Exon20754   307   I: 8015872-8016178 Caenorhabditis elegans
Exon20757   173   I: 8016284-8016456 Caenorhabditis elegans
Exon20760   232   I: 8016581-8016812 Caenorhabditis elegans
Exon20763   90   I: 8016872-8016961 Caenorhabditis elegans
Exon20767   122   I: 8017134-8017255 Caenorhabditis elegans
Exon20769   109   I: 8017784-8017892 Caenorhabditis elegans
Exon20773   280   I: 8018139-8018418 Caenorhabditis elegans
Exon20777   148   I: 8018470-8018617 Caenorhabditis elegans
Exon20781   660   I: 8018921-8019580 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C54G4.1c.1 8014410 8019580 1

1 Sequence

Length
2889

1 Sequence Ontology Term

Identifier Name Description
transcript