WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:K04G2.5a Sequence Name  K04G2.5a
Length (nt)  672   Chromosome Location  I: 8037184-8037231
Chromosome . Primary Identifier  I Chromosome Location . Start  8037184
Chromosome Location . End  8037231
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K04G2.5a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE27390 ATH-1, isoform a 24.3 223 Caenorhabditis elegans
 

Other

8 RNAi

WormBase ID
WBRNAi00049938
WBRNAi00003919
WBRNAi00103743
WBRNAi00103735
WBRNAi00103711
WBRNAi00103717
WBRNAi00103724
WBRNAi00103729

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:K04G2.5a 8037184 8037231 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010564 ath-1 K04G2.5 Caenorhabditis elegans

4 Locations


Feature . Primary Identifier
Start End Strand
CDS:K04G2.5a 8037184 8037231 -1
CDS:K04G2.5a 8037888 8038052 -1
CDS:K04G2.5a 8038100 8038394 -1
CDS:K04G2.5a 8038676 8038839 -1

1 Sequence

Length
672

1 Sequence Ontology Term

Identifier Name Description
CDS  

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K04G2.5a.4 K04G2.5a.4 1174   I: 8036941-8039768
Transcript:K04G2.5a.1 K04G2.5a.1 1100   I: 8036941-8039181
Transcript:K04G2.5a.3 K04G2.5a.3 1591   I: 8036941-8039831
Transcript:K04G2.5a.2 K04G2.5a.2 982   I: 8036945-8038910