WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52B5.1c.1 Sequence Name  F52B5.1c.1
Length (nt)  3648   Chromosome Location  I: 8297294-8306422
Chromosome . Primary Identifier  I Chromosome Location . Start  8297294
Chromosome Location . End  8306422 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52B5.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009920 abts-1 F52B5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52B5.1c F52B5.1c 3648   I: 8297294-8297404

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52B5.1c.1 8297294 8306422 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon21617   111   I: 8297294-8297404 Caenorhabditis elegans
Exon21620   312   I: 8297744-8298055 Caenorhabditis elegans
Exon21623   132   I: 8298144-8298275 Caenorhabditis elegans
Exon21626   660   I: 8298536-8299195 Caenorhabditis elegans
Exon21629   365   I: 8299499-8299863 Caenorhabditis elegans
Exon21632   1147   I: 8300337-8301483 Caenorhabditis elegans
Exon21635   189   I: 8301845-8302033 Caenorhabditis elegans
Exon21636   162   I: 8302897-8303058 Caenorhabditis elegans
Exon21639   104   I: 8303643-8303746 Caenorhabditis elegans
Exon21642   267   I: 8304115-8304381 Caenorhabditis elegans
Exon21645   199   I: 8306224-8306422 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52B5.1c.1 8297294 8306422 -1

1 Sequence

Length
3648

1 Sequence Ontology Term

Identifier Name Description
transcript