WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F16D3.2.1 Sequence Name  F16D3.2.1
Length (nt)  2557   Chromosome Location  I: 8358254-8363858
Chromosome . Primary Identifier  I Chromosome Location . Start  8358254
Chromosome Location . End  8363858 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F16D3.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004684 rsd-6 F16D3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F16D3.2 F16D3.2 2070   I: 8358724-8358807

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F16D3.2.1 8358254 8363858 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon21774   554   I: 8358254-8358807 Caenorhabditis elegans
Exon21775   225   I: 8359333-8359557 Caenorhabditis elegans
Exon21777   142   I: 8359608-8359749 Caenorhabditis elegans
Exon21779   202   I: 8360020-8360221 Caenorhabditis elegans
Exon21781   253   I: 8360924-8361176 Caenorhabditis elegans
Exon21783   100   I: 8361488-8361587 Caenorhabditis elegans
Exon21785   352   I: 8361633-8361984 Caenorhabditis elegans
Exon21787   146   I: 8362217-8362362 Caenorhabditis elegans
Exon21789   178   I: 8362775-8362952 Caenorhabditis elegans
Exon21791   290   I: 8363035-8363324 Caenorhabditis elegans
Exon21794   115   I: 8363744-8363858 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F16D3.2.1 8358254 8363858 -1

1 Sequence

Length
2557

1 Sequence Ontology Term

Identifier Name Description
transcript