WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F16D3.4.1 Sequence Name  F16D3.4.1
Length (nt)  3770   Chromosome Location  I: 8363954-8369562
Chromosome . Primary Identifier  I Chromosome Location . Start  8363954
Chromosome Location . End  8369562 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F16D3.4.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008887 tbcd-1 F16D3.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F16D3.4 F16D3.4 3492   I: 8364224-8364418

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F16D3.4.1 8363954 8369562 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon21795   465   I: 8363954-8364418 Caenorhabditis elegans
Exon21796   288   I: 8364476-8364763 Caenorhabditis elegans
Exon21797   279   I: 8364942-8365220 Caenorhabditis elegans
Exon21798   141   I: 8365271-8365411 Caenorhabditis elegans
Exon21799   181   I: 8365675-8365855 Caenorhabditis elegans
Exon21800   116   I: 8365903-8366018 Caenorhabditis elegans
Exon21801   762   I: 8366430-8367191 Caenorhabditis elegans
Exon21802   490   I: 8367450-8367939 Caenorhabditis elegans
Exon21803   425   I: 8368415-8368839 Caenorhabditis elegans
Exon21804   335   I: 8368891-8369225 Caenorhabditis elegans
Exon21805   288   I: 8369275-8369562 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F16D3.4.1 8363954 8369562 -1

1 Sequence

Length
3770

1 Sequence Ontology Term

Identifier Name Description
transcript