WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01H8.5d.1 Sequence Name  T01H8.5d.1
Length (nt)  6497   Chromosome Location  I: 8549519-8567144
Chromosome . Primary Identifier  I Chromosome Location . Start  8549519
Chromosome Location . End  8567144 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01H8.5d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001651 gon-2 T01H8.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01H8.5d T01H8.5d 5796   I: 8549949-8550071

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T01H8.5d.1 8549519 8567144 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

28 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon22308   553   I: 8549519-8550071 Caenorhabditis elegans
Exon22314   237   I: 8550123-8550359 Caenorhabditis elegans
Exon22319   733   I: 8550410-8551142 Caenorhabditis elegans
Exon22324   133   I: 8551193-8551325 Caenorhabditis elegans
Exon22329   142   I: 8551375-8551516 Caenorhabditis elegans
Exon22334   64   I: 8551836-8551899 Caenorhabditis elegans
Exon22339   160   I: 8551956-8552115 Caenorhabditis elegans
Exon22344   311   I: 8552196-8552506 Caenorhabditis elegans
Exon22349   125   I: 8552877-8553001 Caenorhabditis elegans
Exon22354   201   I: 8553054-8553254 Caenorhabditis elegans
Exon22359   77   I: 8553313-8553389 Caenorhabditis elegans
Exon22364   111   I: 8553435-8553545 Caenorhabditis elegans
Exon22369   638   I: 8553819-8554456 Caenorhabditis elegans
Exon22374   317   I: 8555048-8555364 Caenorhabditis elegans
Exon22379   358   I: 8555417-8555774 Caenorhabditis elegans
Exon22384   218   I: 8556176-8556393 Caenorhabditis elegans
Exon22389   289   I: 8556444-8556732 Caenorhabditis elegans
Exon22394   243   I: 8557201-8557443 Caenorhabditis elegans
Exon22399   321   I: 8557486-8557806 Caenorhabditis elegans
Exon22405   145   I: 8557851-8557995 Caenorhabditis elegans
Exon22409   85   I: 8558390-8558474 Caenorhabditis elegans
Exon22413   237   I: 8558524-8558760 Caenorhabditis elegans
Exon22417   264   I: 8559370-8559633 Caenorhabditis elegans
Exon22423   149   I: 8563611-8563759 Caenorhabditis elegans
Exon22428   115   I: 8564024-8564138 Caenorhabditis elegans
Exon22434   139   I: 8566056-8566194 Caenorhabditis elegans
Exon22437   62   I: 8566965-8567026 Caenorhabditis elegans
Exon22440   70   I: 8567075-8567144 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T01H8.5d.1 8549519 8567144 -1

1 Sequence

Length
6497

1 Sequence Ontology Term

Identifier Name Description
transcript