WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01H8.1c.1 Sequence Name  T01H8.1c.1
Length (nt)  2810   Chromosome Location  I: 8573853-8580205
Chromosome . Primary Identifier  I Chromosome Location . Start  8573853
Chromosome Location . End  8580205 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01H8.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011352 rskn-1 T01H8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01H8.1c T01H8.1c 2238   I: 8574339-8574339

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T01H8.1c.1 8573853 8580205 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon22453   487   I: 8573853-8574339 Caenorhabditis elegans
Exon22458   143   I: 8574433-8574575 Caenorhabditis elegans
Exon22464   360   I: 8574813-8575172 Caenorhabditis elegans
Exon22469   244   I: 8575222-8575465 Caenorhabditis elegans
Exon22474   233   I: 8575517-8575749 Caenorhabditis elegans
Exon22479   421   I: 8575797-8576217 Caenorhabditis elegans
Exon22484   71   I: 8576264-8576334 Caenorhabditis elegans
Exon22489   181   I: 8576379-8576559 Caenorhabditis elegans
Exon22494   187   I: 8576608-8576794 Caenorhabditis elegans
Exon22499   163   I: 8576845-8577007 Caenorhabditis elegans
Exon22504   117   I: 8577058-8577174 Caenorhabditis elegans
Exon22514   203   I: 8580003-8580205 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T01H8.1c.1 8573853 8580205 -1

1 Sequence

Length
2810

1 Sequence Ontology Term

Identifier Name Description
transcript