WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53B6.2a.1 Sequence Name  F53B6.2a.1
Length (nt)  3351   Chromosome Location  I: 8931033-8942287
Chromosome . Primary Identifier  I Chromosome Location . Start  8931033
Chromosome Location . End  8942287 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53B6.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009958 madd-4 F53B6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53B6.2a F53B6.2a 3138   I: 8931163-8931232

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53B6.2a.1 8931033 8942287 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon23756   200   I: 8931033-8931232 Caenorhabditis elegans
Exon23759   55   I: 8931386-8931440 Caenorhabditis elegans
Exon23762   225   I: 8931964-8932188 Caenorhabditis elegans
Exon23765   295   I: 8932261-8932555 Caenorhabditis elegans
Exon23768   258   I: 8932784-8933041 Caenorhabditis elegans
Exon23771   501   I: 8933097-8933597 Caenorhabditis elegans
Exon23774   470   I: 8933711-8934180 Caenorhabditis elegans
Exon23777   131   I: 8934439-8934569 Caenorhabditis elegans
Exon23780   81   I: 8934997-8935077 Caenorhabditis elegans
Exon23784   200   I: 8939469-8939668 Caenorhabditis elegans
Exon23786   139   I: 8940139-8940277 Caenorhabditis elegans
Exon23788   6   I: 8940562-8940567 Caenorhabditis elegans
Exon23789   202   I: 8940824-8941025 Caenorhabditis elegans
Exon23791   112   I: 8941076-8941187 Caenorhabditis elegans
Exon23793   117   I: 8941234-8941350 Caenorhabditis elegans
Exon23795   162   I: 8941887-8942048 Caenorhabditis elegans
Exon23797   197   I: 8942091-8942287 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53B6.2a.1 8931033 8942287 -1

1 Sequence

Length
3351

1 Sequence Ontology Term

Identifier Name Description
transcript