WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53B6.2c.1 Sequence Name  F53B6.2c.1
Length (nt)  3341   Chromosome Location  I: 8931042-8942292
Chromosome . Primary Identifier  I Chromosome Location . Start  8931042
Chromosome Location . End  8942292 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53B6.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009958 madd-4 F53B6.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53B6.2c F53B6.2c 3132   I: 8931163-8931232

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53B6.2c.1 8931042 8942292 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon23758   191   I: 8931042-8931232 Caenorhabditis elegans
Exon23761   55   I: 8931386-8931440 Caenorhabditis elegans
Exon23764   225   I: 8931964-8932188 Caenorhabditis elegans
Exon23767   295   I: 8932261-8932555 Caenorhabditis elegans
Exon23770   258   I: 8932784-8933041 Caenorhabditis elegans
Exon23773   501   I: 8933097-8933597 Caenorhabditis elegans
Exon23776   470   I: 8933711-8934180 Caenorhabditis elegans
Exon23779   131   I: 8934439-8934569 Caenorhabditis elegans
Exon23782   81   I: 8934997-8935077 Caenorhabditis elegans
Exon23785   200   I: 8939469-8939668 Caenorhabditis elegans
Exon23787   139   I: 8940139-8940277 Caenorhabditis elegans
Exon23790   202   I: 8940824-8941025 Caenorhabditis elegans
Exon23792   112   I: 8941076-8941187 Caenorhabditis elegans
Exon23794   117   I: 8941234-8941350 Caenorhabditis elegans
Exon23796   162   I: 8941887-8942048 Caenorhabditis elegans
Exon23798   202   I: 8942091-8942292 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53B6.2c.1 8931042 8942292 -1

1 Sequence

Length
3341

1 Sequence Ontology Term

Identifier Name Description
transcript