WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F36H2.1c.1 Sequence Name  F36H2.1c.1
Length (nt)  3792   Chromosome Location  I: 9234174-9242119
Chromosome . Primary Identifier  I Chromosome Location . Start  9234174
Chromosome Location . End  9242119 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F36H2.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009498 tat-5 F36H2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F36H2.1c F36H2.1c 3216   I: 9234678-9234866

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F36H2.1c.1 9234174 9242119 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon24618   693   I: 9234174-9234866 Caenorhabditis elegans
Exon24623   149   I: 9235674-9235822 Caenorhabditis elegans
Exon24627   257   I: 9235869-9236125 Caenorhabditis elegans
Exon24631   575   I: 9236911-9237485 Caenorhabditis elegans
Exon24635   598   I: 9237965-9238562 Caenorhabditis elegans
Exon24639   337   I: 9238910-9239246 Caenorhabditis elegans
Exon24643   247   I: 9239689-9239935 Caenorhabditis elegans
Exon24647   510   I: 9239990-9240499 Caenorhabditis elegans
Exon24650   151   I: 9240900-9241050 Caenorhabditis elegans
Exon24654   275   I: 9241845-9242119 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F36H2.1c.1 9234174 9242119 -1

1 Sequence

Length
3792

1 Sequence Ontology Term

Identifier Name Description
transcript