WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F36H2.1d.1 Sequence Name  F36H2.1d.1
Length (nt)  3715   Chromosome Location  I: 9234178-9245926
Chromosome . Primary Identifier  I Chromosome Location . Start  9234178
Chromosome Location . End  9245926 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F36H2.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009498 tat-5 F36H2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F36H2.1d F36H2.1d 3180   I: 9234678-9234866

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F36H2.1d.1 9234178 9245926 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon24620   689   I: 9234178-9234866 Caenorhabditis elegans
Exon24624   149   I: 9235674-9235822 Caenorhabditis elegans
Exon24628   257   I: 9235869-9236125 Caenorhabditis elegans
Exon24632   575   I: 9236911-9237485 Caenorhabditis elegans
Exon24636   598   I: 9237965-9238562 Caenorhabditis elegans
Exon24640   337   I: 9238910-9239246 Caenorhabditis elegans
Exon24644   247   I: 9239689-9239935 Caenorhabditis elegans
Exon24648   510   I: 9239990-9240499 Caenorhabditis elegans
Exon24652   160   I: 9240900-9241059 Caenorhabditis elegans
Exon24656   80   I: 9245688-9245767 Caenorhabditis elegans
Exon24658   113   I: 9245814-9245926 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F36H2.1d.1 9234178 9245926 -1

1 Sequence

Length
3715

1 Sequence Ontology Term

Identifier Name Description
transcript