WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C12C8.3a.2 Sequence Name  C12C8.3a.2
Length (nt)  4631   Chromosome Location  I: 9334800-9341919
Chromosome . Primary Identifier  I Chromosome Location . Start  9334800
Chromosome Location . End  9341919 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C12C8.3a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003026 lin-41 C12C8.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C12C8.3a C12C8.3a 3444   I: 9335965-9336126

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C12C8.3a.2 9334800 9341919 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon25102   1327   I: 9334800-9336126 Caenorhabditis elegans
Exon25107   271   I: 9336173-9336443 Caenorhabditis elegans
Exon25111   678   I: 9336491-9337168 Caenorhabditis elegans
Exon25115   213   I: 9337214-9337426 Caenorhabditis elegans
Exon25119   372   I: 9337787-9338158 Caenorhabditis elegans
Exon25123   80   I: 9338208-9338287 Caenorhabditis elegans
Exon25129   314   I: 9338503-9338816 Caenorhabditis elegans
Exon25131   97   I: 9338856-9338952 Caenorhabditis elegans
Exon25135   124   I: 9340020-9340143 Caenorhabditis elegans
Exon25139   272   I: 9340198-9340469 Caenorhabditis elegans
Exon25143   272   I: 9340857-9341128 Caenorhabditis elegans
Exon25147   141   I: 9341176-9341316 Caenorhabditis elegans
Exon25151   50   I: 9341360-9341409 Caenorhabditis elegans
Exon25155   262   I: 9341453-9341714 Caenorhabditis elegans
Exon25160   158   I: 9341762-9341919 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C12C8.3a.2 9334800 9341919 -1

1 Sequence

Length
4631

1 Sequence Ontology Term

Identifier Name Description
transcript