WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F16A11.3b.1 Sequence Name  F16A11.3b.1
Length (nt)  4828   Chromosome Location  I: 9364099-9389639
Chromosome . Primary Identifier  I Chromosome Location . Start  9364099
Chromosome Location . End  9389639 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F16A11.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008878 ppfr-1 F16A11.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F16A11.3b F16A11.3b 4095   I: 9364777-9364845

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F16A11.3b.1 9364099 9389639 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

23 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon25232   747   I: 9364099-9364845 Caenorhabditis elegans
Exon25236   261   I: 9364890-9365150 Caenorhabditis elegans
Exon25239   75   I: 9365206-9365280 Caenorhabditis elegans
Exon25242   286   I: 9365336-9365621 Caenorhabditis elegans
Exon25245   82   I: 9365805-9365886 Caenorhabditis elegans
Exon25248   101   I: 9365933-9366033 Caenorhabditis elegans
Exon25251   306   I: 9366104-9366409 Caenorhabditis elegans
Exon25254   122   I: 9366463-9366584 Caenorhabditis elegans
Exon25259   61   I: 9366644-9366704 Caenorhabditis elegans
Exon25262   564   I: 9366823-9367386 Caenorhabditis elegans
Exon25266   174   I: 9367541-9367714 Caenorhabditis elegans
Exon25270   262   I: 9367845-9368106 Caenorhabditis elegans
Exon25278   155   I: 9369867-9370021 Caenorhabditis elegans
Exon25282   180   I: 9370463-9370642 Caenorhabditis elegans
Exon25286   443   I: 9370777-9371219 Caenorhabditis elegans
Exon25290   69   I: 9371335-9371403 Caenorhabditis elegans
Exon25294   60   I: 9371456-9371515 Caenorhabditis elegans
Exon25298   114   I: 9371954-9372067 Caenorhabditis elegans
Exon25321   159   I: 9382472-9382630 Caenorhabditis elegans
Exon25327   218   I: 9388005-9388222 Caenorhabditis elegans
Exon25331   134   I: 9388666-9388799 Caenorhabditis elegans
Exon25335   178   I: 9388896-9389073 Caenorhabditis elegans
Exon25341   77   I: 9389563-9389639 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F16A11.3b.1 9364099 9389639 -1

1 Sequence

Length
4828

1 Sequence Ontology Term

Identifier Name Description
transcript