WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F16A11.3a.1 Sequence Name  F16A11.3a.1
Length (nt)  5139   Chromosome Location  I: 9364160-9389633
Chromosome . Primary Identifier  I Chromosome Location . Start  9364160
Chromosome Location . End  9389633 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F16A11.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008878 ppfr-1 F16A11.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F16A11.3a F16A11.3a 4473   I: 9364777-9364845

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F16A11.3a.1 9364160 9389633 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

24 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon25233   686   I: 9364160-9364845 Caenorhabditis elegans
Exon25235   261   I: 9364890-9365150 Caenorhabditis elegans
Exon25238   75   I: 9365206-9365280 Caenorhabditis elegans
Exon25241   286   I: 9365336-9365621 Caenorhabditis elegans
Exon25244   82   I: 9365805-9365886 Caenorhabditis elegans
Exon25247   101   I: 9365933-9366033 Caenorhabditis elegans
Exon25250   306   I: 9366104-9366409 Caenorhabditis elegans
Exon25253   122   I: 9366463-9366584 Caenorhabditis elegans
Exon25258   61   I: 9366644-9366704 Caenorhabditis elegans
Exon25261   564   I: 9366823-9367386 Caenorhabditis elegans
Exon25265   174   I: 9367541-9367714 Caenorhabditis elegans
Exon25269   262   I: 9367845-9368106 Caenorhabditis elegans
Exon25273   378   I: 9368919-9369296 Caenorhabditis elegans
Exon25277   155   I: 9369867-9370021 Caenorhabditis elegans
Exon25281   180   I: 9370463-9370642 Caenorhabditis elegans
Exon25285   443   I: 9370777-9371219 Caenorhabditis elegans
Exon25289   69   I: 9371335-9371403 Caenorhabditis elegans
Exon25293   60   I: 9371456-9371515 Caenorhabditis elegans
Exon25297   114   I: 9371954-9372067 Caenorhabditis elegans
Exon25320   159   I: 9382472-9382630 Caenorhabditis elegans
Exon25326   218   I: 9388005-9388222 Caenorhabditis elegans
Exon25330   134   I: 9388666-9388799 Caenorhabditis elegans
Exon25334   178   I: 9388896-9389073 Caenorhabditis elegans
Exon25339   71   I: 9389563-9389633 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F16A11.3a.1 9364160 9389633 -1

1 Sequence

Length
5139

1 Sequence Ontology Term

Identifier Name Description
transcript