WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F16A11.3d.1 Sequence Name  F16A11.3d.1
Length (nt)  4689   Chromosome Location  I: 9364777-9389982
Chromosome . Primary Identifier  I Chromosome Location . Start  9364777
Chromosome Location . End  9389982 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F16A11.3d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008878 ppfr-1 F16A11.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F16A11.3d F16A11.3d 4689   I: 9364777-9364845

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F16A11.3d.1 9364777 9389982 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

26 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon25234   69   I: 9364777-9364845 Caenorhabditis elegans
Exon25237   261   I: 9364890-9365150 Caenorhabditis elegans
Exon25240   75   I: 9365206-9365280 Caenorhabditis elegans
Exon25243   286   I: 9365336-9365621 Caenorhabditis elegans
Exon25246   82   I: 9365805-9365886 Caenorhabditis elegans
Exon25249   101   I: 9365933-9366033 Caenorhabditis elegans
Exon25252   306   I: 9366104-9366409 Caenorhabditis elegans
Exon25255   122   I: 9366463-9366584 Caenorhabditis elegans
Exon25260   61   I: 9366644-9366704 Caenorhabditis elegans
Exon25264   564   I: 9366823-9367386 Caenorhabditis elegans
Exon25268   174   I: 9367541-9367714 Caenorhabditis elegans
Exon25272   262   I: 9367845-9368106 Caenorhabditis elegans
Exon25275   378   I: 9368919-9369296 Caenorhabditis elegans
Exon25280   155   I: 9369867-9370021 Caenorhabditis elegans
Exon25284   180   I: 9370463-9370642 Caenorhabditis elegans
Exon25288   443   I: 9370777-9371219 Caenorhabditis elegans
Exon25292   69   I: 9371335-9371403 Caenorhabditis elegans
Exon25296   60   I: 9371456-9371515 Caenorhabditis elegans
Exon25300   114   I: 9371954-9372067 Caenorhabditis elegans
Exon25323   159   I: 9382472-9382630 Caenorhabditis elegans
Exon25329   218   I: 9388005-9388222 Caenorhabditis elegans
Exon25333   134   I: 9388666-9388799 Caenorhabditis elegans
Exon25337   178   I: 9388896-9389073 Caenorhabditis elegans
Exon25340   71   I: 9389563-9389633 Caenorhabditis elegans
Exon25342   42   I: 9389768-9389809 Caenorhabditis elegans
Exon25343   125   I: 9389858-9389982 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F16A11.3d.1 9364777 9389982 -1

1 Sequence

Length
4689

1 Sequence Ontology Term

Identifier Name Description
transcript