WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F16A11.3c.1 Sequence Name  F16A11.3c.1
Length (nt)  3141   Chromosome Location  I: 9366554-9389584
Chromosome . Primary Identifier  I Chromosome Location . Start  9366554
Chromosome Location . End  9389584 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F16A11.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008878 ppfr-1 F16A11.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F16A11.3c F16A11.3c 3141   I: 9366554-9366584

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F16A11.3c.1 9366554 9389584 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon25257   31   I: 9366554-9366584 Caenorhabditis elegans
Exon25263   564   I: 9366823-9367386 Caenorhabditis elegans
Exon25267   174   I: 9367541-9367714 Caenorhabditis elegans
Exon25271   262   I: 9367845-9368106 Caenorhabditis elegans
Exon25274   378   I: 9368919-9369296 Caenorhabditis elegans
Exon25279   155   I: 9369867-9370021 Caenorhabditis elegans
Exon25283   180   I: 9370463-9370642 Caenorhabditis elegans
Exon25287   443   I: 9370777-9371219 Caenorhabditis elegans
Exon25291   69   I: 9371335-9371403 Caenorhabditis elegans
Exon25295   60   I: 9371456-9371515 Caenorhabditis elegans
Exon25299   114   I: 9371954-9372067 Caenorhabditis elegans
Exon25322   159   I: 9382472-9382630 Caenorhabditis elegans
Exon25328   218   I: 9388005-9388222 Caenorhabditis elegans
Exon25332   134   I: 9388666-9388799 Caenorhabditis elegans
Exon25336   178   I: 9388896-9389073 Caenorhabditis elegans
Exon25338   22   I: 9389563-9389584 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F16A11.3c.1 9366554 9389584 -1

1 Sequence

Length
3141

1 Sequence Ontology Term

Identifier Name Description
transcript