WormMine: Gene WBGene00010618

• WormBase Gene ID: WBGene00010618
• Gene Name: K07A1.14
• Sequence Name: K07A1.14
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by daf-2; eat-2; and ogt-1 based on microarray and RNA-seq studies. Is affected by methylmercuric chloride and Colistin based on microarray studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 370

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00010618

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

9 Allele

• gk962858
• gk962706
• gk963902
• gk963849
• gk964316
• tm11393
• WBVar02073716
• gk375782
• gk119131

1 Chromosome

• WormBase ID: I
• Organism: Caenorhabditis elegans
• Length (nt): 15072434

1 Chromosome Location

• Feature . Primary Identifier: WBGene00010618
• Start: 9604810
• End: 9605179
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrI_9605180..9605750
• Length (nt): 571
• Chromosome Location: I: 9605180-9605750
• Organism: Caenorhabditis elegans

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2.	Student's t-test, fold change > 2, p-value < 0.05.	WBPaper00055386:daf-2(e1370)_upregulated
	Genes that show significant variation due to strain by stage interaction.	An analysis of variance (one-way ANOVA) test was used to see which genes changed significantly over developmental time, using the strain and stage of each array as the parameters. qvalue, an R-package, was used to obtain false-discovery rates (FDR). Significant genes have an FDR of less than .05.	WBPaper00032479:CB4856vsN2_LifeStageProfile_Variation
	Genes that showed increased expression after exposure to 7.5uM CH3HgCl for 24 hours.	Rosetta Resolver was used to identify differentially expressed genes using an error-weighted, 1-way ANOVA with a Bonferroni correction. A 2-fold change in expression, relative to untreated controls, and a p-value < 0.01 was required for a gene to qualify as significantly, differentially expressed.	WBPaper00044316:CH3HgCl_7.5uM_upregulated
Bacteria infection: Photorhabdus luminescens	Genes with increased expression after 24 hours of infection by P.lumniescens Fold changes shown are pathogen vs OP50.	For RNA-seq and tiling arrays, log2 fold changes between gene expression values of infected versus uninfected nematodes were calculated. For log2 fold changes > 0.00001 the values > 81.25th percentile were defined as up-regulated and for log2 fold changes < -0.00001 the values < 18.75th percentile were defined as down-regulated.	WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
	Genes down-regulated after 24 hour exposure to colistin.	Gene lists were created using a cutoff P-value of < 0.05, 2-fold change.	WBPaper00045673:colistin_downregulated
	Transcripts that showed significantly increased expression in eat-2(ad465) comparing to in N2.	Student's t-test, fold change > 2, p-value < 0.05.	WBPaper00055386:eat-2(ad465)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00010618
• Start: 9604810
• End: 9605179
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 370

1 Sequence Ontology Term