WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:C16C2.3a.2 Sequence Name  C16C2.3a.2
Length (nt)  2518   Chromosome Location  I: 9715321-9720912
Chromosome . Primary Identifier  I Chromosome Location . Start  9715321
Chromosome Location . End  9720912 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C16C2.3a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007620 ocrl-1 C16C2.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C16C2.3a C16C2.3a 2139   I: 9715633-9715757

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C16C2.3a.2 9715321 9720912 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon26179   437   I: 9715321-9715757 Caenorhabditis elegans
Exon26183   107   I: 9715801-9715907 Caenorhabditis elegans
Exon26186   136   I: 9715957-9716092 Caenorhabditis elegans
Exon26189   400   I: 9716435-9716834 Caenorhabditis elegans
Exon26192   45   I: 9717327-9717371 Caenorhabditis elegans
Exon26196   69   I: 9717600-9717668 Caenorhabditis elegans
Exon26198   259   I: 9718197-9718455 Caenorhabditis elegans
Exon26200   362   I: 9718818-9719179 Caenorhabditis elegans
Exon26202   294   I: 9719496-9719789 Caenorhabditis elegans
Exon26204   118   I: 9720328-9720445 Caenorhabditis elegans
Exon26206   129   I: 9720572-9720700 Caenorhabditis elegans
Exon26208   162   I: 9720751-9720912 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C16C2.3a.2 9715321 9720912 -1

1 Sequence

Length
2518

1 Sequence Ontology Term

Identifier Name Description
transcript