WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C16C2.3a.1 Sequence Name  C16C2.3a.1
Length (nt)  2584   Chromosome Location  I: 9715322-9728006
Chromosome . Primary Identifier  I Chromosome Location . Start  9715322
Chromosome Location . End  9728006 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C16C2.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007620 ocrl-1 C16C2.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C16C2.3a C16C2.3a 2139   I: 9715633-9715757

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C16C2.3a.1 9715322 9728006 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon26180   436   I: 9715322-9715757 Caenorhabditis elegans
Exon26182   107   I: 9715801-9715907 Caenorhabditis elegans
Exon26185   136   I: 9715957-9716092 Caenorhabditis elegans
Exon26188   400   I: 9716435-9716834 Caenorhabditis elegans
Exon26191   45   I: 9717327-9717371 Caenorhabditis elegans
Exon26195   69   I: 9717600-9717668 Caenorhabditis elegans
Exon26197   259   I: 9718197-9718455 Caenorhabditis elegans
Exon26199   362   I: 9718818-9719179 Caenorhabditis elegans
Exon26201   294   I: 9719496-9719789 Caenorhabditis elegans
Exon26203   118   I: 9720328-9720445 Caenorhabditis elegans
Exon26205   129   I: 9720572-9720700 Caenorhabditis elegans
Exon26207   156   I: 9720751-9720906 Caenorhabditis elegans
Exon26234   73   I: 9727934-9728006 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C16C2.3a.1 9715322 9728006 -1

1 Sequence

Length
2584

1 Sequence Ontology Term

Identifier Name Description
transcript