WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52F12.1a.1 Sequence Name  F52F12.1a.1
Length (nt)  1897   Chromosome Location  I: 9888356-9892223
Chromosome . Primary Identifier  I Chromosome Location . Start  9888356
Chromosome Location . End  9892223 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52F12.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003842 oct-1 F52F12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52F12.1a F52F12.1a 1758   I: 9888450-9888577

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52F12.1a.1 9888356 9892223 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon26650   222   I: 9888356-9888577 Caenorhabditis elegans
Exon26652   133   I: 9888743-9888875 Caenorhabditis elegans
Exon26654   397   I: 9888954-9889350 Caenorhabditis elegans
Exon26656   116   I: 9889402-9889517 Caenorhabditis elegans
Exon26658   187   I: 9889566-9889752 Caenorhabditis elegans
Exon26660   109   I: 9890061-9890169 Caenorhabditis elegans
Exon26662   259   I: 9890216-9890474 Caenorhabditis elegans
Exon26664   79   I: 9890880-9890958 Caenorhabditis elegans
Exon26666   83   I: 9891017-9891099 Caenorhabditis elegans
Exon26668   92   I: 9891198-9891289 Caenorhabditis elegans
Exon26670   79   I: 9891335-9891413 Caenorhabditis elegans
Exon26672   78   I: 9891467-9891544 Caenorhabditis elegans
Exon26674   63   I: 9892161-9892223 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52F12.1a.1 9888356 9892223 -1

1 Sequence

Length
1897

1 Sequence Ontology Term

Identifier Name Description
transcript