WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0379.3b.1 Sequence Name  B0379.3b.1
Length (nt)  3402   Chromosome Location  I: 10080159-10085765
Chromosome . Primary Identifier  I Chromosome Location . Start  10080159
Chromosome Location . End  10085765 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0379.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003508 mut-16 B0379.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0379.3b B0379.3b 3153   I: 10080162-10080401

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0379.3b.1 10080159 10085765 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon27073   243   I: 10080159-10080401 Caenorhabditis elegans
Exon27076   123   I: 10080446-10080568 Caenorhabditis elegans
Exon27078   168   I: 10080622-10080789 Caenorhabditis elegans
Exon27080   125   I: 10080836-10080960 Caenorhabditis elegans
Exon27082   392   I: 10081413-10081804 Caenorhabditis elegans
Exon27084   123   I: 10081855-10081977 Caenorhabditis elegans
Exon27086   113   I: 10082023-10082135 Caenorhabditis elegans
Exon27088   430   I: 10082216-10082645 Caenorhabditis elegans
Exon27090   309   I: 10082845-10083153 Caenorhabditis elegans
Exon27092   61   I: 10083204-10083264 Caenorhabditis elegans
Exon27094   73   I: 10083315-10083387 Caenorhabditis elegans
Exon27096   119   I: 10083923-10084041 Caenorhabditis elegans
Exon27098   724   I: 10084350-10085073 Caenorhabditis elegans
Exon27100   399   I: 10085367-10085765 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0379.3b.1 10080159 10085765 1

1 Sequence

Length
3402

1 Sequence Ontology Term

Identifier Name Description
transcript