WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0379.4a.1 Sequence Name  B0379.4a.1
Length (nt)  1219   Chromosome Location  I: 10086437-10102012
Chromosome . Primary Identifier  I Chromosome Location . Start  10086437
Chromosome Location . End  10102012 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0379.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007054 scpl-1 B0379.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0379.4a B0379.4a 1038   I: 10086534-10086608

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0379.4a.1 10086437 10102012 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon27102   172   I: 10086437-10086608 Caenorhabditis elegans
Exon27104   81   I: 10086788-10086868 Caenorhabditis elegans
Exon27107   86   I: 10086951-10087036 Caenorhabditis elegans
Exon27110   100   I: 10087389-10087488 Caenorhabditis elegans
Exon27113   150   I: 10087843-10087992 Caenorhabditis elegans
Exon27116   108   I: 10088388-10088495 Caenorhabditis elegans
Exon27120   111   I: 10089862-10089972 Caenorhabditis elegans
Exon27122   107   I: 10091426-10091532 Caenorhabditis elegans
Exon27125   99   I: 10093679-10093777 Caenorhabditis elegans
Exon27130   97   I: 10100664-10100760 Caenorhabditis elegans
Exon27131   108   I: 10101905-10102012 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0379.4a.1 10086437 10102012 -1

1 Sequence

Length
1219

1 Sequence Ontology Term

Identifier Name Description
transcript