WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0379.4b.1 Sequence Name  B0379.4b.1
Length (nt)  1533   Chromosome Location  I: 10086534-10094480
Chromosome . Primary Identifier  I Chromosome Location . Start  10086534
Chromosome Location . End  10094480 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0379.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007054 scpl-1 B0379.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0379.4b B0379.4b 1476   I: 10086534-10086608

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0379.4b.1 10086534 10094480 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon27103   75   I: 10086534-10086608 Caenorhabditis elegans
Exon27105   81   I: 10086788-10086868 Caenorhabditis elegans
Exon27108   86   I: 10086951-10087036 Caenorhabditis elegans
Exon27111   100   I: 10087389-10087488 Caenorhabditis elegans
Exon27114   150   I: 10087843-10087992 Caenorhabditis elegans
Exon27117   108   I: 10088388-10088495 Caenorhabditis elegans
Exon27121   111   I: 10089862-10089972 Caenorhabditis elegans
Exon27123   107   I: 10091426-10091532 Caenorhabditis elegans
Exon27126   99   I: 10093679-10093777 Caenorhabditis elegans
Exon27127   616   I: 10093865-10094480 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0379.4b.1 10086534 10094480 -1

1 Sequence

Length
1533

1 Sequence Ontology Term

Identifier Name Description
transcript