WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y106G6D.5a.1 Sequence Name  Y106G6D.5a.1
Length (nt)  2500   Chromosome Location  I: 10119187-10122171
Chromosome . Primary Identifier  I Chromosome Location . Start  10119187
Chromosome Location . End  10122171 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y106G6D.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00014965 Y106G6D.5 Y106G6D.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y106G6D.5a Y106G6D.5a 2031   I: 10119563-10119659

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y106G6D.5a.1 10119187 10122171 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon27160   473   I: 10119187-10119659 Caenorhabditis elegans
Exon27165   127   I: 10119709-10119835 Caenorhabditis elegans
Exon27169   115   I: 10119880-10119994 Caenorhabditis elegans
Exon27175   406   I: 10120039-10120444 Caenorhabditis elegans
Exon27179   299   I: 10120499-10120797 Caenorhabditis elegans
Exon27184   83   I: 10120845-10120927 Caenorhabditis elegans
Exon27189   270   I: 10121038-10121307 Caenorhabditis elegans
Exon27193   80   I: 10121352-10121431 Caenorhabditis elegans
Exon27200   362   I: 10121483-10121844 Caenorhabditis elegans
Exon27206   285   I: 10121887-10122171 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y106G6D.5a.1 10119187 10122171 -1

1 Sequence

Length
2500

1 Sequence Ontology Term

Identifier Name Description
transcript