WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F25D7.5.1 Sequence Name  F25D7.5.1
Length (nt)  3722   Chromosome Location  I: 10422895-10429034
Chromosome . Primary Identifier  I Chromosome Location . Start  10422895
Chromosome Location . End  10429034 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F25D7.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009114 paml-2 F25D7.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F25D7.5 F25D7.5 3651   I: 10422958-10422982

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F25D7.5.1 10422895 10429034 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon27827   88   I: 10422895-10422982 Caenorhabditis elegans
Exon27828   71   I: 10423024-10423094 Caenorhabditis elegans
Exon27829   549   I: 10423283-10423831 Caenorhabditis elegans
Exon27830   70   I: 10424106-10424175 Caenorhabditis elegans
Exon27831   189   I: 10424219-10424407 Caenorhabditis elegans
Exon27832   145   I: 10424689-10424833 Caenorhabditis elegans
Exon27833   177   I: 10424880-10425056 Caenorhabditis elegans
Exon27834   151   I: 10425436-10425586 Caenorhabditis elegans
Exon27835   294   I: 10425633-10425926 Caenorhabditis elegans
Exon27836   152   I: 10426514-10426665 Caenorhabditis elegans
Exon27837   92   I: 10426714-10426805 Caenorhabditis elegans
Exon27838   109   I: 10426865-10426973 Caenorhabditis elegans
Exon27839   839   I: 10427045-10427883 Caenorhabditis elegans
Exon27840   108   I: 10428025-10428132 Caenorhabditis elegans
Exon27841   535   I: 10428192-10428726 Caenorhabditis elegans
Exon27842   153   I: 10428882-10429034 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F25D7.5.1 10422895 10429034 -1

1 Sequence

Length
3722

1 Sequence Ontology Term

Identifier Name Description
transcript