WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y106G6H.12a.1 Sequence Name  Y106G6H.12a.1
Length (nt)  3083   Chromosome Location  I: 10464289-10471056
Chromosome . Primary Identifier  I Chromosome Location . Start  10464289
Chromosome Location . End  10471056 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y106G6H.12a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001112 duo-3 Y106G6H.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y106G6H.12a Y106G6H.12a 2775   I: 10464597-10464818

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y106G6H.12a.1 10464289 10471056 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon27965   530   I: 10464289-10464818 Caenorhabditis elegans
Exon27968   631   I: 10465373-10466003 Caenorhabditis elegans
Exon27971   378   I: 10466694-10467071 Caenorhabditis elegans
Exon27974   129   I: 10467454-10467582 Caenorhabditis elegans
Exon27977   257   I: 10467957-10468213 Caenorhabditis elegans
Exon27981   250   I: 10468270-10468519 Caenorhabditis elegans
Exon27983   216   I: 10469465-10469680 Caenorhabditis elegans
Exon27986   288   I: 10469735-10470022 Caenorhabditis elegans
Exon27987   79   I: 10470358-10470436 Caenorhabditis elegans
Exon27988   95   I: 10470486-10470580 Caenorhabditis elegans
Exon27989   230   I: 10470827-10471056 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y106G6H.12a.1 10464289 10471056 -1

1 Sequence

Length
3083

1 Sequence Ontology Term

Identifier Name Description
transcript