WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T22A3.3a Sequence Name  T22A3.3a
Length (nt)  987   Chromosome Location  I: 10588512-10588541
Chromosome . Primary Identifier  I Chromosome Location . Start  10588512
Chromosome Location . End  10588541
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T22A3.3a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE52562 LST-1, isoform a 36.8 328 Caenorhabditis elegans
 

Other

13 RNAi

WormBase ID
WBRNAi00053772
WBRNAi00004253
WBRNAi00063356
WBRNAi00063368
WBRNAi00113807
WBRNAi00113806
WBRNAi00113810
WBRNAi00113805
WBRNAi00113809
WBRNAi00111858
WBRNAi00061893
WBRNAi00078916
WBRNAi00035778

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T22A3.3a 10588512 10588541 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003083 lst-1 T22A3.3 Caenorhabditis elegans

5 Locations


Feature . Primary Identifier
Start End Strand
CDS:T22A3.3a 10588512 10588541 1
CDS:T22A3.3a 10588679 10588747 1
CDS:T22A3.3a 10588934 10589479 1
CDS:T22A3.3a 10589562 10589815 1
CDS:T22A3.3a 10589993 10590080 1

1 Sequence

Length
987

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T22A3.3a.1 T22A3.3a.1 1382   I: 10588501-10590464