WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y53H1C.2c.1 Sequence Name  Y53H1C.2c.1
Length (nt)  4963   Chromosome Location  I: 11400531-11416433
Chromosome . Primary Identifier  I Chromosome Location . Start  11400531
Chromosome Location . End  11416433 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y53H1C.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001215 ego-2 Y53H1C.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y53H1C.2c Y53H1C.2c 4485   I: 11400996-11401086

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y53H1C.2c.1 11400531 11416433 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon29737   556   I: 11400531-11401086 Caenorhabditis elegans
Exon29739   137   I: 11402262-11402398 Caenorhabditis elegans
Exon29741   173   I: 11402609-11402781 Caenorhabditis elegans
Exon29743   193   I: 11402834-11403026 Caenorhabditis elegans
Exon29745   1727   I: 11403476-11405202 Caenorhabditis elegans
Exon29747   309   I: 11406169-11406477 Caenorhabditis elegans
Exon29750   150   I: 11408164-11408313 Caenorhabditis elegans
Exon29752   728   I: 11409452-11410179 Caenorhabditis elegans
Exon29754   230   I: 11411339-11411568 Caenorhabditis elegans
Exon29756   156   I: 11412993-11413148 Caenorhabditis elegans
Exon29758   141   I: 11413609-11413749 Caenorhabditis elegans
Exon29760   142   I: 11414917-11415058 Caenorhabditis elegans
Exon29762   128   I: 11416002-11416129 Caenorhabditis elegans
Exon29764   75   I: 11416187-11416261 Caenorhabditis elegans
Exon29766   118   I: 11416316-11416433 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y53H1C.2c.1 11400531 11416433 -1

1 Sequence

Length
4963

1 Sequence Ontology Term

Identifier Name Description
transcript