WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00196963 Gene Name  Y47H9A.4
Sequence Name  ? Y47H9A.4 Organism  Caenorhabditis elegans
Automated Description  Is affected by pmt-2 based on microarray studies. Is affected by 4-bromodiphenyl ether based on microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 69
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00196963

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y47H9A.4 Y47H9A.4 69   I: 11628598-11628666
 

Other

0 CDSs

0 RNAi Result

12 Allele

Public Name
gk962858
gk962706
gk963849
gk343940
gk963906
WBVar02122759
WBVar02124864
WBVar02123649
WBVar02123969
gk123115
WBVar02124082
WBVar02121699

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00196963 11628598 11628666 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrI_11628667..11629640   974 I: 11628667-11629640 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in pmt-2(RNAi) animals comparing to control animals iinjected with empty vector. Fold-change > 1.5, ANOVA P values < 0.05. WBPaper00055482:pmt-2(RNAi)_downregulated
  Transcripts that showed significantly increased expression after 8 hour exposure to 10ug per ml or 30ug per ml 4-bromodiphenyl ether (BDE-3) at L4 larva stage. t-test, fold change >= 2, p-value < 0.05. WBPaper00051021:4-bromodiphenyl-ether_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00196963 11628598 11628666 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
69

1 Sequence Ontology Term