WormMine: Gene WBGene00196824

• WormBase Gene ID: WBGene00196824
• Gene Name: F11A6.7
• Sequence Name: F11A6.7
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in neurons based on RNA-seq studies. Is affected by ifo-1 and ogt-1 based on microarray and RNA-seq studies. Is affected by Oligosaccharides based on microarray studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 52

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00196824

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F11A6.7	F11A6.7	52	I: 11670498-11670549

Other

0 CDSs

0 RNAi Result

5 Allele

• gk962858
• gk962706
• gk963849
• WBVar01713343
• gk963906

1 Chromosome

• WormBase ID: I
• Organism: Caenorhabditis elegans
• Length (nt): 15072434

1 Chromosome Location

• Feature . Primary Identifier: WBGene00196824
• Start: 11670498
• End: 11670549
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrI_11670550..11675940
• Length (nt): 5391
• Chromosome Location: I: 11670550-11675940
• Organism: Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology.	DESEQ2, fold change > 2 and FDR < 0.01.	WBPaper00062103:neuron_enriched
	Transcripts that showed significantly increased expression after four-day-old young adult worms were placed on NGM plates seeded with OP50 in the presence 5% Agaro-oligosaccharides(AGO) for 24 h, comparing to animals grown in the absence of AGO.	Fold change > 2.	WBPaper00064306:Agaro-oligosaccharides_upregulated
	Transcripts that showed significantly increased expression in ifo-1(kc2) comparing to in N2 animals.	ANOVA, p-value < 0.05.	WBPaper00056167:ifo-1(kc2)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00196824
• Start: 11670498
• End: 11670549
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 52

1 Sequence Ontology Term