WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T22H2.5a.2 Sequence Name  T22H2.5a.2
Length (nt)  1261   Chromosome Location  I: 11688681-11690830
Chromosome . Primary Identifier  I Chromosome Location . Start  11688681
Chromosome Location . End  11690830 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T22H2.5a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011935 scrm-1 T22H2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T22H2.5a T22H2.5a 870   I: 11689109-11689113

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T22H2.5a.2 11688681 11690830 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon30591   308   I: 11688681-11688988 Caenorhabditis elegans
Exon30594   79   I: 11689035-11689113 Caenorhabditis elegans
Exon30596   46   I: 11689345-11689390 Caenorhabditis elegans
Exon30599   59   I: 11689438-11689496 Caenorhabditis elegans
Exon30603   103   I: 11689543-11689645 Caenorhabditis elegans
Exon30607   252   I: 11690052-11690303 Caenorhabditis elegans
Exon30611   414   I: 11690417-11690830 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T22H2.5a.2 11688681 11690830 -1

1 Sequence

Length
1261

1 Sequence Ontology Term

Identifier Name Description
transcript