WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00077785 Gene Name  F35E2.11
Sequence Name  ? F35E2.11 Organism  Caenorhabditis elegans
Automated Description  Enriched in male based on RNA-seq studies. Is affected by daf-2; eat-2; and ogt-1 based on microarray and RNA-seq studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 2421
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00077785

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

37 Allele

Public Name
gk962706
gk963849
gk962859
gk964175
gk842812
gk372376
gk765667
gk401296
gk558704
gk734111
gk870738
gk466499
gk613594
gk906002
gk929709
gk571234
gk849842
gk618849
gk904071
gk875881
gk396154
h10054
gk963906
WBVar01713416
otn1225
WBVar02121096
ttTI21158
WBVar01663694
WBVar00216155
WBVar01285434

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00077785 11731058 11733478 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrI_11726327..11731057   4731 I: 11726327-11731057 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_upregulated
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_14
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron
  Transcripts enriched in male him-5(e1490 animals, comparing to in N2 hermaphrodite animals from L3 larva to young adult stages. DESeq FDR < 0.01. WBPaper00050231:male_enriched
  Transcripts that showed significantly increased expression in eat-2(ad465) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:eat-2(ad465)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00077785 11731058 11733478 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
2421

1 Sequence Ontology Term