WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y47H9C.4b.1 Sequence Name  Y47H9C.4b.1
Length (nt)  3549   Chromosome Location  I: 11851623-11868105
Chromosome . Primary Identifier  I Chromosome Location . Start  11851623
Chromosome Location . End  11868105 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y47H9C.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000415 ced-1 Y47H9C.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y47H9C.4b Y47H9C.4b 3213   I: 11851953-11852041

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y47H9C.4b.1 11851623 11868105 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon31080   419   I: 11851623-11852041 Caenorhabditis elegans
Exon31083   75   I: 11854402-11854476 Caenorhabditis elegans
Exon31085   209   I: 11855611-11855819 Caenorhabditis elegans
Exon31088   289   I: 11857037-11857325 Caenorhabditis elegans
Exon31091   162   I: 11858455-11858616 Caenorhabditis elegans
Exon31094   1363   I: 11859665-11861027 Caenorhabditis elegans
Exon31097   312   I: 11862793-11863104 Caenorhabditis elegans
Exon31100   266   I: 11864482-11864747 Caenorhabditis elegans
Exon31103   197   I: 11865897-11866093 Caenorhabditis elegans
Exon31106   102   I: 11867068-11867169 Caenorhabditis elegans
Exon31109   155   I: 11867951-11868105 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y47H9C.4b.1 11851623 11868105 -1

1 Sequence

Length
3549

1 Sequence Ontology Term

Identifier Name Description
transcript