WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y53C10A.9.1 Sequence Name  Y53C10A.9.1
Length (nt)  4875   Chromosome Location  I: 12011195-12018684
Chromosome . Primary Identifier  I Chromosome Location . Start  12011195
Chromosome Location . End  12018684 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y53C10A.9.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000023 abt-5 Y53C10A.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y53C10A.9 Y53C10A.9 4749   I: 12011276-12011404

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y53C10A.9.1 12011195 12018684 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon31353   210   I: 12011195-12011404 Caenorhabditis elegans
Exon31354   146   I: 12011460-12011605 Caenorhabditis elegans
Exon31355   168   I: 12011940-12012107 Caenorhabditis elegans
Exon31356   235   I: 12012160-12012394 Caenorhabditis elegans
Exon31357   382   I: 12012823-12013204 Caenorhabditis elegans
Exon31358   1076   I: 12013260-12014335 Caenorhabditis elegans
Exon31359   313   I: 12014826-12015138 Caenorhabditis elegans
Exon31360   174   I: 12015187-12015360 Caenorhabditis elegans
Exon31361   179   I: 12015527-12015705 Caenorhabditis elegans
Exon31362   204   I: 12015753-12015956 Caenorhabditis elegans
Exon31363   254   I: 12016215-12016468 Caenorhabditis elegans
Exon31364   193   I: 12016513-12016705 Caenorhabditis elegans
Exon31365   136   I: 12016750-12016885 Caenorhabditis elegans
Exon31366   137   I: 12016937-12017073 Caenorhabditis elegans
Exon31367   87   I: 12017118-12017204 Caenorhabditis elegans
Exon31368   192   I: 12017517-12017708 Caenorhabditis elegans
Exon31369   66   I: 12017755-12017820 Caenorhabditis elegans
Exon31370   107   I: 12017869-12017975 Caenorhabditis elegans
Exon31371   409   I: 12018024-12018432 Caenorhabditis elegans
Exon31372   207   I: 12018478-12018684 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y53C10A.9.1 12011195 12018684 1

1 Sequence

Length
4875

1 Sequence Ontology Term

Identifier Name Description
transcript