WormMine: Gene WBGene00077534

• WormBase Gene ID: WBGene00077534
• Gene Name: F41D3.14
• Sequence Name: F41D3.14
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by ahr-1; fzo-1; and mip-1 based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 201

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00077534

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

12 Allele

• gk962706
• gk963849
• gk962859
• gk964175
• gk963095
• gk964202
• gk964201
• WBVar02123567
• WBVar02121103
• WBVar02122512
• WBVar02124530
• WBVar02016690

1 Chromosome

• WormBase ID: I
• Organism: Caenorhabditis elegans
• Length (nt): 15072434

1 Chromosome Location

• Feature . Primary Identifier: WBGene00077534
• Start: 12258603
• End: 12258803
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrI_12257181..12258602
• Length (nt): 1422
• Chromosome Location: I: 12257181-12258602
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in mip-1(how5) comparing to in control animals.	DESeq2, fold change > 2.	WBPaper00066038:mip-1(how5)_upregulated
	Genes that were enriched in spermatogenic fem-3(q96gf) gonads comparing to in oogenic fog-2(q71), according to RNAseq analysis.	To identify differentially expressed transcripts, authors used R/Bioconductor package DESeq.	WBPaper00045521:Spermatogenic
	Transcripts that showed significantly increased expression in zcIs13; twnEx320[Punc-119-ds-fzo-1] comparing to in zcIs13[Phsp-6-gfp] animals.	Fold change >= 1.5.	WBPaper00061409:neuronal-fzo-1(RNAi)_upregulated
	Genes that showed decreased mRNA expression in both ahr-1(ia03) and ahr-1(ju145) comparing to in N2.	Both of the ahr-1 mutants studied when compared to wild-type N2 according to the criteria of fold change > 2 or < 0.5, FDR-corrected p-value of < 0.05 and FPKM of > 0 in both samples.	WBPaper00044753:ahr-1_downregulated
	Transcripts that showed significantly increased expression in adbp-1(qj1) comparing to in N2 animals at L4 larva stage.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00067079:adbp-1(qj1)_upregulated_L4

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00077534
• Start: 12258603
• End: 12258803
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 201

1 Sequence Ontology Term