WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y18D10A.1.1 Sequence Name  Y18D10A.1.1
Length (nt)  5207   Chromosome Location  I: 12787943-12806581
Chromosome . Primary Identifier  I Chromosome Location . Start  12787943
Chromosome Location . End  12806581 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y18D10A.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012474 attf-6 Y18D10A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y18D10A.1 Y18D10A.1 4905   I: 12788210-12788371

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y18D10A.1.1 12787943 12806581 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon33004   429   I: 12787943-12788371 Caenorhabditis elegans
Exon33005   173   I: 12790042-12790214 Caenorhabditis elegans
Exon33006   286   I: 12791169-12791454 Caenorhabditis elegans
Exon33007   331   I: 12792659-12792989 Caenorhabditis elegans
Exon33008   299   I: 12794196-12794494 Caenorhabditis elegans
Exon33009   1527   I: 12795419-12796945 Caenorhabditis elegans
Exon33010   357   I: 12798038-12798394 Caenorhabditis elegans
Exon33011   90   I: 12800150-12800239 Caenorhabditis elegans
Exon33012   81   I: 12800298-12800378 Caenorhabditis elegans
Exon33013   99   I: 12800999-12801097 Caenorhabditis elegans
Exon33014   923   I: 12802495-12803417 Caenorhabditis elegans
Exon33015   259   I: 12804776-12805034 Caenorhabditis elegans
Exon33016   186   I: 12806014-12806199 Caenorhabditis elegans
Exon33017   111   I: 12806310-12806420 Caenorhabditis elegans
Exon33018   56   I: 12806526-12806581 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y18D10A.1.1 12787943 12806581 -1

1 Sequence

Length
5207

1 Sequence Ontology Term

Identifier Name Description
transcript