WormMine: Gene WBGene00271598

• WormBase Gene ID: WBGene00271598
• Gene Name: Y18D10A.30
• Sequence Name: Y18D10A.30
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by inx-14 and ogt-1 based on RNA-seq studies. Is affected by atracurium based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: :±
• Length (nt): 562

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00271598

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

12 Allele

• gk963849
• gk964175
• gk342783
• gk589255
• gk629422
• gk589254
• gk665996
• gk654139
• gk804597
• gk125994
• gk125996
• gk125995

1 Chromosome

• WormBase ID: I
• Organism: Caenorhabditis elegans
• Length (nt): 15072434

1 Chromosome Location

• Feature . Primary Identifier: WBGene00271598
• Start: 12927895
• End: 12928456
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrI_12928457..12929371
• Length (nt): 915
• Chromosome Location: I: 12928457-12929371
• Organism: Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts that showed significantly decreased expression in animals with germline-specific inx-14(RNAi) comparing to in aniamls fed with control vector, both exposed to PA14 infection.	DESeq2. Differentially-expressed genes (DEG) were identified based on two criteria: FDR (False discovery rateusing Benjamini-Hochberg adjusted p-values) < 0.01 and absolute value of log2(Fold Change) > 1.	WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
	Transcripts that showed significantly decreased expression after 24 hours of treatment by 50 uM atracurium.	Differential expression was assessed using an empirical Bayes moderated t test within limma's linear model framework including the precision weights estimated by voom. Resulting p-values were corrected for multiple testing using the Benjamini-Hochberg false discovery rate. Fold change > 2, p-value < 0.05.	WBPaper00061636:atracurium_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00271598
• Start: 12927895
• End: 12928456
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 562

1 Sequence Ontology Term